| # | Team | P | W | D | L | GF | GA | GD | Pts |
|---|---|---|---|---|---|---|---|---|---|
| Group A | |||||||||
| 1 | Arsenal | 6 | 5 | 0 | 1 | 8 | 3 | 5 | 15 |
| 2 | Eindhoven | 6 | 4 | 1 | 1 | 15 | 4 | 11 | 13 |
| 3 | Bodo-Glimt | 6 | 1 | 1 | 4 | 5 | 10 | -5 | 4 |
| 4 | Zurich | 6 | 1 | 0 | 5 | 5 | 16 | -11 | 3 |
| Group B | |||||||||
| 1 | Fenerbahce | 6 | 4 | 2 | 0 | 13 | 7 | 6 | 14 |
| 2 | Rennes | 6 | 3 | 3 | 0 | 11 | 8 | 3 | 12 |
| 3 | AEK Larnaca | 6 | 1 | 2 | 3 | 7 | 10 | -3 | 5 |
| 4 | Dynamo Kiev | 6 | 0 | 1 | 5 | 5 | 11 | -6 | 1 |
| Group C | |||||||||
| 1 | Betis | 6 | 5 | 1 | 0 | 12 | 4 | 8 | 16 |
| 2 | Roma | 6 | 3 | 1 | 2 | 11 | 7 | 4 | 10 |
| 3 | Ludogorets | 6 | 2 | 1 | 3 | 8 | 9 | -1 | 7 |
| 4 | HJK | 6 | 0 | 1 | 5 | 2 | 13 | -11 | 1 |
| Group D | |||||||||
| 1 | Union Gilloise | 6 | 4 | 1 | 1 | 11 | 7 | 4 | 13 |
| 2 | Union Berlin | 6 | 4 | 0 | 2 | 4 | 2 | 2 | 12 |
| 3 | Braga | 6 | 3 | 1 | 2 | 9 | 7 | 2 | 10 |
| 4 | Malmo | 6 | 0 | 0 | 6 | 3 | 11 | -8 | 0 |
| Group E | |||||||||
| 1 | Real Sociedad | 6 | 5 | 0 | 1 | 10 | 2 | 8 | 15 |
| 2 | Man Utd | 6 | 5 | 0 | 1 | 10 | 3 | 7 | 15 |
| 3 | Sheriff Tiraspol | 6 | 2 | 0 | 4 | 4 | 10 | -6 | 6 |
| 4 | Omonia Nicosia | 6 | 0 | 0 | 6 | 3 | 12 | -9 | 0 |
| Group F | |||||||||
| 1 | Feyenoord | 6 | 2 | 2 | 2 | 13 | 9 | 4 | 8 |
| 2 | Midtjylland | 6 | 2 | 2 | 2 | 12 | 8 | 4 | 8 |
| 3 | Lazio | 6 | 2 | 2 | 2 | 9 | 11 | -2 | 8 |
| 4 | Sturm Graz | 6 | 2 | 2 | 2 | 4 | 10 | -6 | 8 |
| Group G | |||||||||
| 1 | Freiburg | 6 | 4 | 2 | 0 | 13 | 3 | 10 | 14 |
| 2 | Nantes | 6 | 3 | 0 | 3 | 6 | 11 | -5 | 9 |
| 3 | Qarabag | 6 | 2 | 2 | 2 | 9 | 5 | 4 | 8 |
| 4 | Olympiacos | 6 | 0 | 2 | 4 | 2 | 11 | -9 | 2 |
| Group H | |||||||||
| 1 | Ferencvarosi | 6 | 3 | 1 | 2 | 8 | 9 | -1 | 10 |
| 2 | Monaco | 6 | 3 | 1 | 2 | 9 | 8 | 1 | 10 |
| 3 | Trabzonspor | 6 | 3 | 0 | 3 | 11 | 9 | 2 | 9 |
| 4 | Crvena Zvezda | 6 | 2 | 0 | 4 | 9 | 11 | -2 | 6 |
| P | Matches Played |
| W | Matches Won |
| D | Matches Drawn |
| L | Matches Lost |
| GF | Goals For (Goals scored by a team) |
| GA | Goals Against (Goals conceded by a team) |
| GD | Goal Difference |
| Pts | Total Points |
